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parasite: an organism that lives in or on another organism (host) and causes harmful effects (sometimes suffering, even excruciating misery, but not immediately causing death) as it consumes resources from the host. (consumer-resource)
parasite: an organism that lives in or on another organism (host) and causes harmful effects (sometimes suffering, even excruciating misery, but not immediately causing death) as it consumes resources from the host. (consumer-resource)
When parasites colonize a host, that host is said to harbor an infection
parasite: an organism that lives in or on another organism (host) and causes harmful effects (sometimes suffering, even excruciating misery, but not immediately causing death) as it consumes resources from the host. (consumer-resource)
When parasites colonize a host, that host is said to harbor an infection
Only if that infection gives rise to symptoms that are clearly harmful to the host should the host be said to have a disease, e.g., COVID-19
parasite: an organism that lives in or on another organism (host) and causes harmful effects (sometimes suffering, even excruciating misery, but not immediately causing death) as it consumes resources from the host. (consumer-resource)
When parasites colonize a host, that host is said to harbor an infection
Only if that infection gives rise to symptoms that are clearly harmful to the host should the host be said to have a disease, e.g., COVID-19
Pathogen: any parasite that causes a disease (i.e. is ‘pathogenic’), e.g., SARS-CoV-2
though infection by a pathogen does not always result in an infectious disease; asymptomatic
american chestnut trees used to be >50% of trees in temperate forests; now they are rare since the introduce of chestnut blight around 1900 from Asian

tradeoffs: exposure to natural enemies, external envi, difficulty to move among host, ease of feeding on hosts
Successfully finding the right host: Hosts are usually:
Bigger than you, but,
Much more mobile, and
Pretty sparse.
Hosts as reactive environments: resistance, recovery, and immunity
Chimpanzees infected with nematodes seek out and eat a bitter plant that contains chemicals that kill or paralyze the nematodes: Self-medication is not just for humans
A universal pharmacy: Possible self-medication using tree balsam by multiple Atlantic Forest mammals https://onlinelibrary.wiley.com/doi/10.1111/btp.13095?af=R

Stage 1: Egg Tick eggs are often laid in the spring after female ticks complete their two to three-year life span. Eggs are often brown and red in color and appear to be translucent. One tick can lay thousands of eggs. While ticks need to detach before laying eggs (and therefore can’t lay eggs directly on a host), eggs can be found under leaf litter, leaf brush and other warm, soft places outside.
Stage 2: Larva In the summer, tick eggs hatch into six-legged larvae. Although rare, larval ticks may be infectious as some tick-borne illnesses can be transmitted from an adult tick to the eggs, which is called transovarial transmission. However, ticks mainly become infectious once they absorb a pathogen from one of their hosts. For example, during the larvae stage, one of the most common tick host is the white-footed mouse, a mammal which is known to carry Lyme disease causing bacteria (Borrelia burgdorferi). The white-footed mouse is also referred to as the reservoir host of Lyme disease, meaning that this mammal is able to transmit the bacteria to a feeding tick. If instead, the larvae feed on other hosts like racoons and squirrels which are not capable of transmitting the disease, the larvae will not yet become infectious. If a larval tick becomes infected with Lyme disease or another tick-borne illness, they will maintain the infection throughout the remainder of their life which is referred to as transstadial transmission. When the larvae are finished feeding on their first host, they’ll fall to the ground and begin molting as they transition to the next lifecycle stage – nymphs.
Stage 3: Nymph
Between the fall and spring, larvae will molt into nymphs. At this stage, they have eight legs and are most active when the weather is above 37 degrees Fahrenheit (though tick checks should still be performed year-round when traveling through known tick areas). During the colder months, nymphs will sit dormant under leaf litter, snow cover and shaded areas. When the weather warms, nymphs will begin questing behavior in order to locate their next host. If already infected, nymphs can transmit Lyme disease to their new host, or nymphs may become infected with a tick-borne disease by feeding on an infected reservoir host, or even contract a second tick-borne disease making them co-infected with various pathogens. In fact, since April 2019, 7,002 Nymph Blacklegged Ticks were tested for Lyme disease and a total of 31.1% (2,177) tested positive. Find more Tick Testing Data and statistics here – https://www.ticklab.org/statistics.
Once attached to their host, nymphs will feed for four to five days before dropping off to start transitioning into their final life stage – an adult.
Stage 4: Adult
During the fall, when the nymph falls off its host and transitions into an adult, it will look for its third and final host. During the nymph and adult phases, ticks can seek out humans as their hosts and possibly transmit disease(s). In fact, in Pennsylvania, one out of every two Adult Female Blacklegged (Deer) Ticks are infected (45.4% carry Lyme Disease; 17.4% carry Anaplasmosis; 2.8% carry Babesiosis; and 1.1% carry Powassan Virus). Although the prevalence of tick-borne illnesses can range upwards of 65% in some counties of PA, transmission from tick to host can vary from as fast as 15 minutes for Powassan virus to 36-48 hours for Babesiosis. Lyme disease transmission can occur as early as 18-24 hours of a tick being attached to a host.
During winter, adult ticks unable to locate hosts retreat underneath leaf litter or other surface vegetation, becoming inactive in temperatures below 37 degrees Fahrenheit. With the exception of unusually warm winters, adult ticks will begin to become active again in late February / early March, when they will resume their quest for a bloodmeal.
After feeding on their final host, and depending on the weather and time of year, ticks will look to begin mating. Males typically die after mating with a female, and females will reproduce by laying thousands of eggs during the spring and die shortly thereafter, thereby completing the tick lifecycle.
Always remember to keep a lookout for ticks at each stage of their lifecycle so you’re best equipped to avoid tick bites and to protect yourself, your family, your friends and pets.

Jones et al. 2008. Nature. 451:990
Emergence of zoonotic diseases from bringing human beings into closer contact with reservoir species
dSdt=−βSIdIdt=βSI−dIdRdt=dI
dSdt=−βSIdIdt=βSI−dIdRdt=dI

dSdt=−βSIdIdt=βSI−dIdRdt=dI
dSdt=−βSIdIdt=βSI−dIdRdt=dI
dIdt>0 only if βSI>dI
R0=βSIdI=βSd
1d: the average duration of infection
dSdt=−βSIdIdt=βSI−dIdRdt=dI
dIdt>0 only if βSI>dI
R0=βSIdI=βSd
1d: the average duration of infection

Ives and Buzzuto, 2021 https://www.nature.com/articles/s42003-020-01609-6
R0=βSd
R0=βSd
Vaccination: what fraction of population to achieve herd immunity?
R0=βS(1−c)d<1
c>1−dβS=1−1R0
R0=βSd
Vaccination: what fraction of population to achieve herd immunity?
R0=βS(1−c)d<1
c>1−dβS=1−1R0

First, increasing within-host parasite replication increases virulence (A); second, increasing within-host parasite replication increases the number of parasite transmission events over the duration of the infection (B), until a point where increasing parasite replication reduces the infectious period (e.g., by killing the host and preventing transmission) (C); and third, increasing parasite virulence increases parasite transmission (D) until high virulence shortens the infectious period, thereby reducing transmission (E)

The wild rabbits started to resist the virus, the virus started to kill them in a new way, and neither side gained any ground. “It’s like a duck in a stream, paddling like crazy under the water and not getting anywhere,” says Read.
The Next Chapter in a Viral Arms Race
Next step in the ongoing arms race between myxoma virus and wild rabbits in Australia is a novel disease phenotype
Seventy years ago, humans unleashed a killer virus on rabbits. Here's how they beat it
In 1859 European rabbits were introduced to Australia, exponential growth of rabbits
In 1950, the government released a virus known as Myxoma to control rabbits. It kills an infected rabbit in 48 hours, with 99.8% killing rates.
Second breakout: 90%; third breakout: 40-60%; ... 6th breakout: 20%
rabbit populations rebound, virus persist
Environment influences transmission process
Environment affect the growth of pathogen within a host and the host
Environment affect host or vector behavior
Land use change
Climate change
Species invasion
Community composition and biodiversity
In the SIR model, if S is 99 and I is 1 (total population is 100) at the beginning of a disease infection, which has R0 of 3 and average infectious period of 7 days. What is the transmission rate (beta)?
A. 0.1
B. 0.2
C. 0.004
D. 2
If transmission rate is 0.5 and recovery rate is 0.3, what is the herd immunity threshold (let S to be 1)?
A. 0.15
B. 0.57
C. 0.40
D. 0.78
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